NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1001480

Scaffold Ga0213867_1001480


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1001480 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10476
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006020Metagenome / Metatranscriptome383Y
F013173Metagenome / Metatranscriptome273N
F020186Metagenome / Metatranscriptome225N
F020791Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100148026F006020N/AMRATDVVRQVLDLLDEIDGPHDIEDGVEAEVHVHQNNDSDSRFKHILAMLDPQSFDGVANRPNEVVAPISAVTTDAGGGVNGPKHPADIRVKDPRGYE
Ga0213867_100148027F020186GAGGMAILSSINPNRPQRGKRSVRLSGEASPQEIPLSAGTVVLIANGSGTTFTLANGQEGQMMTFVASSDGAGNINDIRVNCRARYAFDNSGVRITGASSTAEWAPFTALQEHSMAWAVFTEGEWCWSQGTNEE
Ga0213867_100148028F013173AGGAMAANGISTLANKQLRQVAKLDLAQAKRKGRVITEGSGTWSDNGVDDATANYARANSMYDLTALPTNYNVNAVNDIPNPDGLLVKRPWVTAQVIAEPETLSDAIIGGGGDLTDLQIWYDAADTATIIPNATDESQITQWTDKSNFAHNANPDGGSAKPTYEDTTPQNGYGYIEFDGVDDRLTINPFTQLAGATGWTMFVVAQKTDGAETTGVLTRTDYGDLRIELAATGSGVTVTTAGQTEVYASQSDTNWNAWTLV
Ga0213867_10014803F020791GAGGMIKALLFIAIGAVGAYLYMNPGDIDGATEMLKQGVNQGATIVKEATDS
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