| Basic Information | |
|---|---|
| Taxon OID | 3300021185 Open in IMG/M |
| Scaffold ID | Ga0206682_10000824 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32458 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (96.00%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.6907 | Long. (o) | -122.3448 | Alt. (m) | Depth (m) | 40 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002322 | Metagenome / Metatranscriptome | 571 | Y |
| F002542 | Metagenome / Metatranscriptome | 550 | Y |
| F010313 | Metagenome / Metatranscriptome | 305 | Y |
| F018181 | Metagenome / Metatranscriptome | 236 | N |
| F021087 | Metagenome | 220 | N |
| F022159 | Metagenome / Metatranscriptome | 215 | N |
| F037238 | Metagenome / Metatranscriptome | 168 | N |
| F065670 | Metagenome / Metatranscriptome | 127 | N |
| F075856 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206682_1000082413 | F021087 | AGG | MRMFNMTLEQHLEEMGIRPKSIIRELEELLDPRLEYLAKGYFNDPRNGNGEVPF |
| Ga0206682_1000082415 | F022159 | GGAG | MTLDTRMVSMVLAENANEFITVKFLTKDDEERTYNGRLNVKKYLVGGERGRKAADVLKKHNLIPMFVGKDGEKPKYKSFSLDRVLALKAGGRHIFGMGNEIA |
| Ga0206682_1000082424 | F010313 | GGA | MTNEQTIIKSLDDSAMARVYHRKRKAVNKAATITERLAFVLAKLTGILYFGFLCFCLGYFSTLYFDGLLFEIPGLVSYWVDFGGKQ |
| Ga0206682_1000082426 | F075856 | GGGGG | MRRLEIEYRTLVFRKDSDKWHCFHAYPCQYACLDHAAELTIDKPHLDFIPVMWRFDANTYSCLTGDDPD |
| Ga0206682_1000082427 | F002322 | GGAG | MIAALPYSKLVEKHILECIQGGIGIRQMIASMQHLQDAPKSLSTMYKIYGSFIEMERAKINGAVGKRVIDQALDGDFKSQELFLRSKGGWSPTQTNIEVEQETDPELDESATATLMSLLGYNTDAPEEETTCTCEKDNCRCS |
| Ga0206682_1000082436 | F002542 | GGAG | MHPTYLGWQVDWPVFIKMPLLADNTNWKRGDHFNWAERGIDQDKVATLYAAGYVHHNKELEVQNKVGDRLSELAGKELETLVNLLNVEVNKRTSSKAEFESKKCKKSKIDDKQRGLIRRFLNVNRWITEDFYEIRDKVLAD |
| Ga0206682_1000082438 | F037238 | AGGAG | MSFRSFDLLNLVRDFGETLTLRKVTTAGTYNPATGAVDSSATTDYSVQGYLYNYNVGVIGGNDEVVRGSRKCIISALDLAAIPDFDDLIIGSGDAVKVISIVSLFSAGTAIGYICDVEE |
| Ga0206682_1000082439 | F018181 | AGGAG | MKAQNQFVKVNASFYKKMEQLEDIVEDAVKEELISIAQSAVSFSPVDTGAYVTSFSFTTGAGRPRGKSSDNKPKKQNPQQKMQEGFQNLLTDINKIDLKNTASVQLRNGSPHAYDVENKGPTWRRSGYKVFAKIRNIYG |
| Ga0206682_100008247 | F065670 | GGAGG | MTKEEMRKLIRALEKSEDVTVEEAVYLIRKRQRELENLEVEYELNWA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |