NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10064838

Scaffold Ga0210396_10064838


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10064838 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3329
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002101Metagenome / Metatranscriptome593Y
F004095Metagenome / Metatranscriptome453Y
F083948Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_100648381F083948N/ALIQAESVVKFQGTFLSLEHGSVSVGTSTSMSVHVSCLKVEPVSSERTQYDVADVSGSLQVGARKNDVNITTGGVLQKTHPQGGSSLSSVVHEGQQTTREESTACGAATRPGGAGDGLNAKWLEIGGGIGGGVLVLCLLLCRGSGTSNVSPSEP
Ga0210396_100648382F004095AGGAGMSGINGDKARFNRRRRQKISRRQSNEKMLKALAEKNLVAPAKPANLKEKVA
Ga0210396_100648383F002101AGGAGMTMPVVALPLSAPEGIPAKKKRVLLLDTSQTKRDLRADVMRQLGIEVDCAADVLEARCWWRADLYNLVLISAAGEIDSRDKFCTDIRSANPPQRIAFFVGGPEYLAAAPHSDEAPVGAGPFDKQMIAALLAQGSHKPSQQQWGILEACRKISSVRSVSEARSRAIRETPRPSRWAEAIEQHSAPEVTQPQPLFATPAEREELL
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