NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000049

Scaffold Ga0210396_10000049


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000049 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)247204
Total Scaffold Genes197 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)140 (71.07%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001107Metagenome / Metatranscriptome776Y
F001591Metagenome / Metatranscriptome667Y
F003428Metagenome / Metatranscriptome487Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_1000004910F001107N/AMRVLRPLRAVSRSYVAVFFAIGQVREWAQFPRALHALAAAALPAMFLLRSTREEIYNILWGLVFGFATLNILSLGARRFEQEKSGLSFGEILAVLVVLVSIVLLGWEMLYVFHILPIQLTPR
Ga0210396_10000049114F001591GGAGMDRRKESRVNLDVPVRVWGVDKMAHPFAELARLRNVSDRGAVLTGVRAKIQPGEVLDVQLGASRSQFRIVWINLSGEAGIQALAFEPPILGIGLPKVFEMVGTG
Ga0210396_1000004921F003428N/AMQSECAKYKELKAREDRAHATWTSFLYRNEHKPKLSDKAKRKHQKEEMEAYQQAHKARLAHAKTCPTCTSNLSDPSDTDPSRKDKQISDL
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