NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000011

Scaffold Ga0210396_10000011


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000011 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)508669
Total Scaffold Genes427 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)317 (74.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002927Metagenome / Metatranscriptome520Y
F006428Metagenome / Metatranscriptome373Y
F010257Metagenome / Metatranscriptome306Y
F057936Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_10000011109F002927N/AVERESGGQFRFSLKGSAGLIVAVAVVAILLIALPAYRWFFLISVLIGVVIAGGLALWYRLRPIKEVEVHNKRPLGL
Ga0210396_10000011166F010257GAGGMAIIIEFHVPSSFVKKAVKWAPTEQQAKVIPFASTQKKSA
Ga0210396_10000011267F006428N/AMKKVFCATLFVLTLLCALPALAQNPNYDQGPIWRVIYYHIKPGQAEPFWKDFREHLKPSYDALKKEGILSDYKVWNNVTTDGPNDWDVAVGLMFPNWAALDQSDAKTATIMAKHYGSRDAMIEAGKKRNELREVVASKLAHEVMPK
Ga0210396_10000011395F057936GAGGVGTKPNSARGADLAERVRSILSSKHLTLSKVSQLSAAPFGRFSRYFLPHTLYHELRLGTFSPSLHQVFALSQVSGYRFFDWLRVLGCNLEDIPRLQVLLPSKRTILLDSSLVDVDGWIPWFRNRARVASAPPIAPLGQLLEVTAPRRLRFLSEIGKRDFLYARIGRQDALAFPDLIPGSIVRVNPKFSNGRIPKSNGATSSQVFLIEHNRGLFCCRLRVVERGVIVPIGTSLSYAQVELKVPREARILGIVDLEIRPMLQAEQPEVPRDLGEHWKPRPLFTDTEFGQLLHASRTKLHLSLREVAGMSRNIADLLGDKKYSVSPSSLCDYELFNMPPRHFHKAITLCSLYGLQFHVFLKAIGIALPEAGTEPIPDHLARRVLDTEPDENSNDNDMHSRSGFLEQMLERCEEIPFFLRESIGVLSGLEDASLDDFFWIGGEYDVLHPCLANGLFALVNRREKRPIHFTTKPPWQQPVYVILMRNGTYLCACCGIENGTLVIHPYSQQFRRPEHLRYHQDAEVIGRIVTVARKLG
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