NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10048102

Scaffold Ga0210408_10048102


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10048102 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3338
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004246Metagenome / Metatranscriptome447Y
F006203Metagenome / Metatranscriptome379Y
F015646Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100481021F004246GAGGMLDDWDERDEVVAAGSICPVPDCGALVISYRPPNRTERDNAKSWCEFTCSRCGIDFTVPEDELIFQSVPKEWLRARFHAV
Ga0210408_100481024F015646AGGAGMKKLYLTVVLTLTCLLGLGGSARAARGNARSVEISDVVQIGSTQLKPGNYKVEWQGTGPAVQVSFQQNGKTMVTVPGTLKTNDDQVTQDAIVTEATSAGTSTLKEIDFGHQKLALVFDQNPGGM
Ga0210408_100481025F006203GGAGGMLKSTVELLGGLFLSALTLVICSCIVGSIVAALRAVSRGSVTVSTRK
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