NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10162848

Scaffold Ga0210405_10162848


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10162848 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1766
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087836Metagenome / Metatranscriptome110N
F099942Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0210405_101628481F099942GGAGGMEPIKAFTLKRDLVAEYDEEYLEMKVSDLRNKLEALSRANYGPQLEIKEIQNSLNPIKAGDIRTKRGIYQLAYRRYILICPDDELLSVILELKSRLDHLDRNGEEIWSPRKLEAIEHSIRAHDGNGHLRVEVEALAKAIDEGRFRIRRDDDLRRDFLVFAFRSNLILFAVLLCVLGLFVILKVDVHSQWRKLPVLLFGACGGMLSATMQYRRQRISPGELRIEPVQLFFRS
Ga0210405_101628482F087836GGAGGMRLLFSALLLCLLAALFITPSRSSAQRARLGKVHALQATSDKSGEHPASTEISGPVTVTCLNGVSETPNTQVSCYVTGPGFTGVLNKGKSANLTGAGTVTLKCHGQGFMRCDARVDIPPPSK
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