NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210405_10000019

Scaffold Ga0210405_10000019


Overview

Basic Information
Taxon OID3300021171 Open in IMG/M
Scaffold IDGa0210405_10000019 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)209558
Total Scaffold Genes196 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)144 (73.47%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000192Metagenome / Metatranscriptome1666Y
F008829Metagenome / Metatranscriptome327Y
F011313Metagenome / Metatranscriptome292Y
F011690Metagenome / Metatranscriptome288Y
F080971Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0210405_10000019100F000192AGGAGMAANQVVLYFDRQEDAVLFTLAASSVMSADISHEGPVHNSSAAVKVAREISKASRITTEGVLNIT
Ga0210405_1000001911F011313GGAGGVLKTAAVVLAFLSLTLFPTTSKAQLIPSGNVYAGVAYADSVDVVNRLAFRGWDASVEAFPLHRLSYIGIVLDGSGVYTKGVANSGTIQQYNLVLGPRISMNFGKWRPFVHAMGGIQQTRSGGNTYHPVAFDIGGGVDRKLPFKNFSWRLQFDYVHTHLLSQNQNEYRGSTGIVWRF
Ga0210405_10000019131F011690N/ALAVPLTDTSPAADAVQLRIQRAMTEEQRLLLALEMSLFARTLARAGIREERPDWTEDQVARELLRLAFLPQSLPEKLR
Ga0210405_1000001975F008829GGGGGMQKLIWLMVWVLLSASTTLAQAKQMQHERRPAVTATVTPAAPMAQPNYQYFSILDGTPKGLWLHHDTEVGTGKPIDVYMFAIELQVMNSDGNFEPVGLIFDNFYTAKAVEPTRAFNPHNARDCKIWNEYVLNEIATRNPTDPTWPYVEFTTALGARTVQTNEDGQVWWSDDIECWGSQDRFAPF
Ga0210405_1000001994F080971GGAVRLPNRREVRGKLHQLSTTGGLLNVEKPLDEKLKVELIFHLGQTTIRENAEMMFPMWATQGWLQPFRFVELPEASKNALEANLLAFVQSTQPPSF
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