NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210400_10001440

Scaffold Ga0210400_10001440


Overview

Basic Information
Taxon OID3300021170 Open in IMG/M
Scaffold IDGa0210400_10001440 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23673
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000359Metagenome / Metatranscriptome1236Y
F000548Metagenome / Metatranscriptome1036Y
F000985Metagenome / Metatranscriptome813Y

Sequences

Protein IDFamilyRBSSequence
Ga0210400_1000144017F000985AGGMKNVYEVLRQKELELTRLEKEVEALRVAAPLLSEEKEPIAEAPKPSLTATGPQQPVRIPPVVAAQGAPAPARVAGWEEAAKRWP
Ga0210400_1000144024F000359N/AMRAQRSQTQGEVTMSGQVILYFDDQADALRFALAAGSVMAGDEARATDDLVQKTTRVTRIRLDAANKGRGKQPNPPERAA
Ga0210400_100014407F000548N/AMGKTGSHNPRWIGIPARVFAMTFLLTVLSFAVALLLSILGTVVYSQVKHVAPNLTFAYRHIAFPFAITVGAIVLVLLLLMEIRNYRQRKTLAGIERVS
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