NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10145304

Scaffold Ga0210406_10145304


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10145304 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1993
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016418Metagenome / Metatranscriptome247Y
F017331Metagenome241Y
F096853Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_101453043F017331AGGAMHRMPNAGDLTSPEFASLTRVSRGFILATIPKAHQARLVELGLIQAMMGGLIITPMGRMVARA
Ga0210406_101453044F096853GAGGMFSIGQIFEGVIGGIPRSAKVIAIVDGGRKGWLEFRDTKGPPFELDVTRASVWKLVQGER
Ga0210406_101453045F016418GAGGMSYRGYDLEQKTLMVGWQITITRDGKFVRNGTVTKDLSAAMNEAEKFIDRTLAESDSAAPGARS
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Institute for Fundamental Biomedical Research
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