NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210406_10004772

Scaffold Ga0210406_10004772


Overview

Basic Information
Taxon OID3300021168 Open in IMG/M
Scaffold IDGa0210406_10004772 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14381
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003670Metagenome / Metatranscriptome474Y
F088996Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0210406_1000477211F003670N/AMRTSIRVKIRLAAYFFFLTAPLWARSHGHPAKLENPSDPGYVLALAAANHFLHAWQTGDIETGMVLLSDDLRHSQNADKLEEFFSNAANRAFEITRAHGHQGLYSFPVVLVTIRGDHVARKFSEIILVESGRNDWVVDKLP
Ga0210406_100047723F088996AGGAGGMLRHTGLICLTCVVLAVPPYLLSQDRAHTLASKAASQHPAKCPKSGMTLQVCHDKFPDGCSASAKPNYDAYLDFLKDQDPGSTMASTKDLAAADFPKLESKLPKTLRVSNHAKLANSLANLGEGNIHTVIAYLYFAEDTSKSTSTVKSFSETSNCRLTPPNTFDYHLGLGFDPALAASAKSTHPKQGDAAFTKLEKQSVVAEMTPYTRHPKWTFARVDALQGQQVKVVGQLMVDNFHFNQKDDCHFPAALPSCWRSTIWEIHPITQFYVCTASGGCTASSPASDWTNLDDMP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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