NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214163_1009546

Scaffold Ga0214163_1009546


Overview

Basic Information
Taxon OID3300021141 Open in IMG/M
Scaffold IDGa0214163_1009546 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - Practice 15JUN2010 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3272
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, WI
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F000852Metagenome / Metatranscriptome860Y
F001019Metagenome / Metatranscriptome804Y
F002387Metagenome / Metatranscriptome565Y
F003603Metagenome / Metatranscriptome477Y
F007468Metagenome / Metatranscriptome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0214163_100954610F000852AGGAMATKREYLKTQGIAVGLRGRFSSAAIKAISDAETNGVTFEAEKKAPKK
Ga0214163_100954611F003603AGGCGGMKSKEHQVGELLANSVEDHFFNPAALGRYLAEQPIYTLDRVIEVVAWVIEKQARRYEREYNNGGTVSEGLALAYKLDQVIDKIKLKNDFNNIKLPPTKQEQAEYVKSMPKVEEQSYRYSYLHETNNGPNATLNVQAVI
Ga0214163_10095462F002387GAGGMSDPHGIIGYYRKGGGIMASFLEDVNQMVIDACYQDIAEQLLEDWINSNLDEGQYYADKQFAEMSGDEFIYGEFNKFYNLKEGDEDYLC
Ga0214163_10095464F007468GGAGGLTTQTKSSKFIEYMKIHLISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNSSNERYN
Ga0214163_10095465F000263AGGMETTTLPPHLQRMVDAGVTGLDIMHGELKNLMLIAEQDLADALEQEERSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGARDEA
Ga0214163_10095468F001019AGAAGGMSYEPSLEILEVNYGCSPEGTDTFEVYDKSEIEPVQIPIFETESLTEAVQFCYNLGKDFTVRTLAEWEERELMNA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.