NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214166_1012441

Scaffold Ga0214166_1012441


Overview

Basic Information
Taxon OID3300021139 Open in IMG/M
Scaffold IDGa0214166_1012441 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2347
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6864Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015058Metagenome / Metatranscriptome257N
F015181Metagenome / Metatranscriptome256N
F082118Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0214166_10124413F015058N/AMDDSWIYTLNSDIMRKDRERLKGQGIVISNLISESQNKTDKEKKYLKILEFMNSIEVLVHFAEQALIWTTRSQLRPGTQIPAEAVRTLTYNDHESLKQKLGAIAVARASILRKKGLMQFHSLSESGNNPVDLCETEKTIVLMKLEAKLLQLEHLYKSLLEIKSVELKMFQ
Ga0214166_10124414F015181N/AMNQTLLSKEDVMILDLLERVKKKEDTLIEESRKKDFIREIQLENFSSEKRRFLVKLLVQNTELKLACKEEKGIANYVTEKFFQTKTLDISDEQLLQQEIVTFQQKLGRIAQLKEKVKIDKGEVANELFKTKTSERMSVILKELSTLLYKTNIRLSNSGLMYNYIISKLFKLVDKGKPAYQAEAMDWTTTYEEK
Ga0214166_10124416F082118N/AMLAQKSQRILELEAQQVELRQNQLNVVAQLQERNIDPEEEALLKEQLELLSKLEVPIHMLLDRYKGKERKEKRKRTS
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