| Basic Information | |
|---|---|
| Taxon OID | 3300021134 Open in IMG/M |
| Scaffold ID | Ga0214171_1001898 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5529 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (42.86%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041008 | Metagenome / Metatranscriptome | 160 | N |
| F055422 | Metagenome / Metatranscriptome | 138 | N |
| F057882 | Metagenome / Metatranscriptome | 135 | N |
| F063335 | Metagenome / Metatranscriptome | 129 | N |
| F073069 | Metagenome / Metatranscriptome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214171_10018981 | F063335 | GAG | MERQKVEELQKVREERLALERAVMQICSSSLHPEWLGLTLIKNYHLIEAINKLVRKEKALAAETK |
| Ga0214171_100189812 | F055422 | AGG | MNNWRFRRRTFPLTRREAHSRVEAIPIANIDILLRSIIDVMNEIRPTDDFDAILATRLYYAVMCLKRFFPEWGISIQPHHIRNASPPNRDRNPPDRNRDSLDIDNYSETEPLITEV |
| Ga0214171_10018985 | F057882 | GGA | MSCGNNLKEFDHPEYGILDPSQVRELRDELTRSFIDSIGGLSNHLKEKETLDIKDRTTKFHFIRVCTIIKDLNEIDPEWYLRYSAPDNECLKIKLHDCKCCYHSYQELNKVIQSPESNSNKSSQTKDKELTQE |
| Ga0214171_10018986 | F073069 | N/A | MTSKDTVLAKREVGIKEIIENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYIITHYLDEKSNTTSKDSEIKNINIFQEKLKKITNSITKITKEKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGMLTEARRRKWTRFY |
| Ga0214171_10018988 | F041008 | N/A | MPIKNEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVINDRLHFQNKLEEVLEQRSSVEKNKSVIALHSVTHTVERELRVVGDYNMVTLYKIDNELLNLRMMYEYLIENFNPHVVTKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |