NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214175_1002868

Scaffold Ga0214175_1002868


Overview

Basic Information
Taxon OID3300021133 Open in IMG/M
Scaffold IDGa0214175_1002868 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 09AUG2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3267
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021219Metagenome219N
F086514Metagenome110N
F091105Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214175_10028681F086514AGGMMINPLNAICLQSGIPNSILQQEIVDEPIVAARLHEMDIKEYMREMGRKGGKARAAKLTPEERTRSALYAVSMREYLKELKKKKTS
Ga0214175_10028682F021219GAGGMKTDPTLDVTPVNVTIGSQWVDACATPFNRSVIEIVNRKGNYVQFKYTILNNKPWDTENTYSCSLDTFHVGWIHPDSEKAKANEMGLSLEDYRAFVAEQEIEELEWQRYLREKRGHDKYYEEAPV
Ga0214175_10028685F091105AGGAMIQQTGTLGHISAISPTGESFESQYGTMYVHNIEFASGTKGTCNSKSPLPKYKVGDSVYFTSSPDKKTGANKIKILGTETFHAKAGIRAENYKQAEKTGFAEKPAYNSDGAALGNAKNIAKDIVIHNARVQNVILKPDELENGDFQEFVRIVLKTQ
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