NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214206_1000246

Scaffold Ga0214206_1000246


Overview

Basic Information
Taxon OID3300021131 Open in IMG/M
Scaffold IDGa0214206_1000246 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)15044
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010592Metagenome301Y
F068376Metagenome124N
F078045Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0214206_10002467F078045AGGMSYEHFVNNYQRWLKSPRTLSEAFKEAEYATAIIRPEEPEYDLVWGFLGALLFVAVFGYGFWRYVNL
Ga0214206_10002468F010592N/AMSTYKPFSQDLHDVYDAPARQAVSIWMQMKKGYEVRENPNRYGVDLICFRSGSPVGALEVEVRQPGFDLHRSIHVGQRKEKLFQEGLPTLFFALTQDLSRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITMFKIANLTDVF
Ga0214206_10002469F068376GGAGMTNFKIEGKTHESPKGHYVKESPHRIEKEVERLERKLDKHIALPMEKAHHAEHGSSQKEAPLPNMRKY
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