NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214180_1002000

Scaffold Ga0214180_1002000


Overview

Basic Information
Taxon OID3300021130 Open in IMG/M
Scaffold IDGa0214180_1002000 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4912
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037028Metagenome168Y
F053744Metagenome140Y
F065357Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0214180_10020001F065357AGAAGMDIEKSLVRHFTKLDSFNEIWDKGIRSEHFFDEGVRELFDFSLDYYIRSEFKQTITQEFLEEKFDDYFARNEWPEEEYLVGVLVEEMVAKYRKAATQNILLKAANALEDDPEAGISLALSSLSKVQNDTSTRERIEIYGDGYERRSNDYIENTLNNSKEKRG
Ga0214180_10020003F037028AGGMTIEEKSFDGPLVNYDDGDYDEVIEAPVVESKKDLVEEIDLEKADARQLLLYFASRYKEVHGFDYVVDWVKEIAILKAFKDRYGVDAGPMIEILFTKNKGKINDAIMTITAFSKGSKWIQDILHIEVQQNRLKEENRQSTEGLMNTDDFLKRFAI
Ga0214180_10020008F053744AGGMSEASKKPRRRIPLRDDELLFTVAMAASFFDISAQSLRKKEKYLYDSSGKLIEISKTPGGDRRYSLNDILKIAHALRRANKMTDRQLRLIVLRVDAFKEPVKKHRLKYRKGNNPS
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