| Basic Information | |
|---|---|
| Taxon OID | 3300021126 Open in IMG/M |
| Scaffold ID | Ga0214187_1002292 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3322 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (12.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013610 | Metagenome / Metatranscriptome | 269 | N |
| F018161 | Metagenome / Metatranscriptome | 236 | N |
| F023037 | Metagenome / Metatranscriptome | 211 | N |
| F025270 | Metagenome / Metatranscriptome | 202 | N |
| F039492 | Metagenome / Metatranscriptome | 163 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214187_10022922 | F023037 | N/A | MNEGQYNPNRLMTPAAAKLELISEIQASLNAIDGEESFSYNIQKVMRLYHAIEKLKQIEPFWLFEVRVISAAGTLV |
| Ga0214187_10022924 | F039492 | N/A | VTVKKVTEKYTLDEQLPEAKLELGHKANAIRILSDLDAPLYMHILTLELCKMTQLIRSHVKEQDKESIAHKAYHVIKEIKKKRPKWIFHQNPRAEYNFEKKSLTDGQVYDRELLKIKDCRNTCGIVNKVDVKRSFSQNKHVFEELKQMQSMGQEKTPRWVFAYKIPSLPIIKDINFNFK |
| Ga0214187_10022926 | F025270 | AGG | MNQETIENGNTLRSVRVRQATKVSKYKLKRQWQKIAAEALARLNDVKTNEINTSEHNIAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPVNS |
| Ga0214187_10022927 | F013610 | N/A | METSTNTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILRIDPYWKLISWPHITIGRIFCSIDAIIIEDKWDCETNKFLFNEIKDAMMKLRRFNNYWQLTEEDAITYTGQVSAGDKSRGYRDTLEELERLIIEV |
| Ga0214187_10022928 | F018161 | N/A | VRKIYKVLSRINCIPPFEDTINFRHLQRLHELMKELRSLDPEYPVTDIVQTSELNILKNLDKIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWEVDLDCIYRYHICRCLRCKSEGFLYTQHVLDSSNEISSPQSDTSEEGKPFPALNSKR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |