NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214187_1001490

Scaffold Ga0214187_1001490


Overview

Basic Information
Taxon OID3300021126 Open in IMG/M
Scaffold IDGa0214187_1001490 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4611
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036545Metagenome / Metatranscriptome169N
F046332Metagenome / Metatranscriptome151N
F051885Metagenome / Metatranscriptome143N
F070906Metagenome / Metatranscriptome122N
F091313Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0214187_10014901F036545N/AMSNTTDETLKHFLKNERKEKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSEFNLEQFKKLQERMTFFKHLHPNWRLGPREVAEYSNCTCELCYQVRYPMKKDDLEEIKSLTIS
Ga0214187_100149010F091313GAGMTTQSNDNSSTPQYRLIDGRYKIVPQFFQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFVHEMKDVLHQIHLYDDDWELKVRTSSDGHLIFRHYNCKCDDIIQHESVSSSQQ
Ga0214187_10014904F051885N/AMSSSSKVEAPNISSIATYVNMPLTKEQLKEKDKLSLQCIELAINLGVKQPKDFGECVKDLYNFKKKIKMYDPEFKFLDDKNVYIYQLLSRLDSIDSSLLPDMSKNTAICQRIHLENRVIRKNYPSWRVDFEQVLKTLKSYSNSEVQSKVRYILQMDKDGNPVLIREICNNSRSLGKDFECDCPDCKVSGDMKHLSLCPK
Ga0214187_10014905F070906N/AMENIERPLVNGSNELNGDETSEFIKQRDHHTTEIAKLLNSVREETSFRSNLSTYQSIHRHLMFLKDLDPEWGLTPFWNEECLRLRYINCTCLDEGTPV
Ga0214187_10014909F046332N/AMNQSAQVSSSGHNRYTSMVSQGPLINGWCHERDQLVRRLIKMVNDVFVDDHYPGDNLVWVKPMRDIAEAIVRLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ
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