NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214211_1003601

Scaffold Ga0214211_1003601


Overview

Basic Information
Taxon OID3300021125 Open in IMG/M
Scaffold IDGa0214211_1003601 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1775
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062460Metagenome / Metatranscriptome130N
F065414Metagenome / Metatranscriptome127N
F069678Metagenome / Metatranscriptome123N
F093242Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0214211_10036012F065414N/AMSEPEVVINLNNLEELNIQKAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKDNKEKFKLIFKVLKRIKAMEPDNHLNLASYIVSRNGV
Ga0214211_10036013F093242N/AMEYSNPEKDKIIDIIQDIMNRIDTNTNYNNNYENFLRMYAAIRKLKTKEPGLKFKVSNIPTK
Ga0214211_10036014F069678N/AMSNQEQLAEGTSLTETLVDTVKTELIYKLKLCIDEINTEVDKVTYENIWSYEKMNRILANLRKLDPNWTINGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLSKPIKCRNIGLPTNSSESESENEHLDDKINNGTAHTDR
Ga0214211_10036015F062460N/AMNLEKSIIQAVTTAVKEIRQESCIEKQVKSLMKIYDAIVVKDNEISTESSLKTTRKRKRPISHE
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Bioinformatics & Integrated Biology Lab
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Biomedical Sciences Research Center "Alexander Fleming"
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