NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214173_103813

Scaffold Ga0214173_103813


Overview

Basic Information
Taxon OID3300021121 Open in IMG/M
Scaffold IDGa0214173_103813 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1777
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013610Metagenome / Metatranscriptome269N
F018161Metagenome / Metatranscriptome236N
F025270Metagenome / Metatranscriptome202N

Sequences

Protein IDFamilyRBSSequence
Ga0214173_1038131F018161AGGMSELESKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDCIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEEGKSFPALNSKNHNGR
Ga0214173_1038132F013610N/AMEGSTNTDNPEKRQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHRFKTDILKIDPYWKLISWPHITIGRIFCSIDAIVTEDKWDCETNKFLFNEIKDSMMKLKRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0214173_1038133F025270N/AMNQETLENGNTLRSLRVRQATKVSKYKLKRQWQKIAAEALARLNDVKTNEINTSEHNIAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPTNS
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