| Basic Information | |
|---|---|
| Taxon OID | 3300021117 Open in IMG/M |
| Scaffold ID | Ga0214208_1000111 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9974 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (22.73%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F058098 | Metagenome / Metatranscriptome | 135 | N |
| F058685 | Metagenome / Metatranscriptome | 134 | Y |
| F059665 | Metagenome / Metatranscriptome | 133 | N |
| F075668 | Metagenome / Metatranscriptome | 118 | N |
| F104447 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214208_10001112 | F104447 | AGGA | MTSTKTGYLCTTIHQLRLKSEFCDIINSIAVKKDFDSNARQYARIHEILQEVKTINPDWRLTACAKYSWK |
| Ga0214208_10001113 | F075668 | N/A | MSNEYSVNNVRCLVMYALNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLCEQNHSSFLQL |
| Ga0214208_10001114 | F059665 | N/A | MSEEKENSKPRFPVRNRIRPSRGRWSDNDLLLFVQSLLNSVNTEENFQVNISVMEELFEAIKDFRERRPNWYFILEKIPAGSREDIGND |
| Ga0214208_10001115 | F058685 | AGGA | MMGRELKSYPCACFNRNQMIKKNRPKRKILLNPGIKSIRALIKNKCITRLAKQRSMIKNKKLNLLIKPCTTSRKSNSNHPNGSSINKRVVVNYPFIPVKLHFLSKKSREWIKLASPMKAIKPSIPAKPNILINKNVLANQITYLISLASHNMKVKSFIPDKLSVLINNSTLGDQITQSKVNYPFIPVEYIATNKKSNIMEEKSILRIDRSTPVGACSFQKRIQGTQIPVFPIPARTILW |
| Ga0214208_10001119 | F058098 | N/A | MSPFRKKVDRIILTPTVRKIIFNMSERRQFQIINKETTLLYGAVKLLAENNFKAVIDDIDTNCKELNQTNIQMYQKLSETLSCLKEIDPEWKIAAETRETFVPVVLIECLREGVSLIDTSDLEDLNFGIYNLVHQILGRIREFDPTWSINSSMRFEALK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |