NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10000007

Scaffold Ga0210404_10000007


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10000007 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)608611
Total Scaffold Genes489 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)378 (77.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000138Metagenome / Metatranscriptome1954Y
F001867Metagenome / Metatranscriptome624Y
F005402Metagenome / Metatranscriptome402Y
F006802Metagenome / Metatranscriptome364Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_10000007280F005402GGAGMRIKLRNIIRFVILLSTVVVIVLVLKKPAPVAQPQTPAAIAANAQSFGQKMEQLELAAHQAPPASRGSYQAASQNQAGIASSAQTKVEVNINSDEVEAALSQAVGERSGEISPESNAGSGVPTIKEQHVSFEGDVLRGQFLAVIAGKDVWVTVAGHLASKDGYATFDPTEFKVGDLSVPVSLVNPTLQKRLAEQRDRLKLPDYVGAVKVQGGELVMQQK
Ga0210404_10000007323F000138AGGAMSLPAINSFRTSFGAFVTYIPLIATVVTCFFSVILARATLRYVEATDKGLALAREEFEREWTPDLHIKLERVSATEARVIVTNLAKTSVLLQLLQLRKISHAVPFERCRLNDPLVGGMTWSQEMGKRILACTDRDFEGPIAASLTFYAAGRMFRTDWFRSHIQVRDGRILSLEPSTMPARRVRVVERKGPERRREFVQDVAGDAVPNKPDTKVDEKFFVTGA
Ga0210404_10000007400F001867GAGGVAKDSPGQAWFQHYLEFRCDDCGSDTGFRSRRRTFSERYLLPIFLLRPVRCAECFRRDYRFLFVPVKERLPELVKKMAAPAASSDRHVA
Ga0210404_10000007418F006802N/ALGYRHLITATYKGGLIVISLFMPLILCVTVVASVGIGVFSAYVVVFGILQACGRASQLRPAQARPRLVLVPSQNHASGD

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