NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10031379

Scaffold Ga0206677_10031379


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10031379 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2980
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F008281Metagenome336Y
F008595Metagenome / Metatranscriptome331Y
F037180Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_100313791F008595N/AITFNGTEYRAADLNEDQMAIAAKLNVAGKKLAKLQEAYDDYVITNEYKNICIESFDRAVNVEDVAEVVEEE
Ga0206677_1003137910F008281AGAAGGMKLMCNTEHGAIQWKWKDSGSPSAEYKSLNHQWWIPKKSDLELVTKVDASIRQEVKDEIWEDMLSDHEYQKSIYKLHKANKRES
Ga0206677_100313794F037180N/AMNELAKVDDKSTLNISLSYLLQIISVIALAVWGYAITKEAIDLNDREIQNLRANQNKYIFPDIRVLEEQVVELEKQVLILQTELDLHKKQDK
Ga0206677_100313796F001942N/AMPRKTSDQHQANSRLGALGESLVQTFLLEYADFCFPTQEKHPADLIVEFGNAIYTVQVKSRRATKEKKFVFAAENSRSMSDTYKNYTCDILAFVFFFDGQKRIMFKSNTSSQNYFTFDKKIITDTMELDSLQESLDTLSAVPVLNPII
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