NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10029812

Scaffold Ga0206677_10029812


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10029812 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3090
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031863Metagenome / Metatranscriptome181Y
F056582Metagenome / Metatranscriptome137Y
F057337Metagenome / Metatranscriptome136N
F071664Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_100298122F056582GGAMARFKTYKIDKTPIDSLPDMVTISKKIKGELFEKKFISIEKAKAWIEFGAANKLIARGAKKVKGELSSIGLISDTAW
Ga0206677_100298123F057337N/AMTYSELNEMTISDLQNLNSMVVQTINNKRTLEGMEKKSSLYVGALVSVDHKKMAGHELRITKINRTKAVCEMVNGRGTYNVPLEMINIING
Ga0206677_100298124F031863N/AMISMGNDLYVVKRKFKIENFAKVMQHFGANEVCENYHCETVLKGRDGFYYLCDKVDDAKI
Ga0206677_100298125F071664N/AMIKKIKSKLLTYLFTDWVKTETDLETLKLTTQMLKNREIQITGIKPVLGFRSHTTNTEIQ
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