NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10015722

Scaffold Ga0206677_10015722


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10015722 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4826
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F020259Metagenome225N
F026537Metagenome / Metatranscriptome197N
F092864Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1001572213F092864N/AMTNEQAIQIVLENKDPSNAERLAAMYACDDILESDIDVWLSKDVSEYLPQFPDIAESLVEDLLKEDSISVERVANSLTEVSRSMYHYVRFYETLSSYDIALSER
Ga0206677_100157222F020259N/AMTERTFTAVADWAERIQMMTQDNNLVNAQDIVHDVFGMLRDDEHFLPRL
Ga0206677_100157227F026537N/AMKKEIINRLKYVEETYAGELETWLDPVTDTYYHVPIEITRRWDETEALESDKQNTMTHERKEEHIRNIAFCIRDGASGYVTDNFRIEDLPTPQRTGTMTQQDTYSNHKARQIFEAFLEQNPNINE
Ga0206677_100157228F008453N/AMSNYAVYRVFRDWEKRPEVLMDGLTREQAQTIVKNTPSDDRSMVVFDEEPKDKQWGRR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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