Basic Information | |
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Taxon OID | 3300021085 Open in IMG/M |
Scaffold ID | Ga0206677_10010547 Open in IMG/M |
Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6416 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (41.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: California | |||||||
Coordinates | Lat. (o) | 36.7468 | Long. (o) | -122.0193 | Alt. (m) | Depth (m) | 30 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F012872 | Metagenome / Metatranscriptome | 276 | Y |
F013704 | Metagenome / Metatranscriptome | 269 | Y |
F014505 | Metagenome / Metatranscriptome | 262 | Y |
F016957 | Metagenome / Metatranscriptome | 243 | N |
Protein ID | Family | RBS | Sequence |
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Ga0206677_100105472 | F012872 | N/A | MDLHFEGNRLYYMEKEAELYRCLDYLSKELSEQDKMTTEQLWEVFHICADTAAVYRHITDYFNTLDRLILDARIKNGNMKQEVYDLKKENARLQESLERYMDEF |
Ga0206677_100105474 | F013704 | GAG | MRTLTNVIVAIVDFKRKMLNGQRFEVSGMEFICIETHAYLQTRVDGEESDIDVGSSYYIVRNTSTGKLHRIPFQRIIEKENEIKWKN |
Ga0206677_100105477 | F014505 | N/A | VDNIENFYRENFKRLTGFIKQYTDGSYEIASDIVQMVFLRLLEMEGEGRTNFYEEDSLNFFYVYRSCINTALKYQRTKKRIDKISLEDMTHDQLEFEEYPEQKIAMEKLINYMEEELEDFHWYDAKMMRIYMSGTSMNKIHRESDIGLTSIKNTIKNGKARIYEKVKEDYQDFQNGDFDK |
Ga0206677_100105478 | F016957 | GAG | MQLRNYLKDKRKLTESRTKVCVEVGKTGEALFKEITGALKSNLEDDKKHIDFYWGEKRVDVKGLKKMHLSGFLLLEFVNVWGGDGWCSKKSKADFIAFQFPDAFYVFRKKHLRVRAIELCEPFYKDKVERRNYIPYDDALHKWVGRWNAQDVFTYLKFEDVEDLVFEVLPYTIKE |
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