NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10001780

Scaffold Ga0206677_10001780


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10001780 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19723
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (28.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F013232Metagenome / Metatranscriptome273Y
F015402Metagenome / Metatranscriptome255Y
F061837Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000178019F015402N/AMGRTKNFLDGLNLNEEELNEELYSRADEDYQYQKWLESKEFVEYVNGELDSTRPRYSEHDIMSATRYASEHITIEPSEVGKKVYDMLFSEKVEEYLTCVSYS
Ga0206677_1000178020F006200N/AMSKTKQDWLEELVKKYSIPTEEKSDKRGILNETQLKNLKDGKN
Ga0206677_1000178023F013232N/AMSDREIMNAKSGVPMWWKPGIAFLKEEWMNHPHLKQFRNKQCTDRKCDCESPKLVNLWEHDSCVRGRIDTDVCVKCNEVESFSIIR
Ga0206677_1000178030F061837N/AMYKKQPIKITKEFSPKYNSPAMKLNLLEQGWKYKGMNNDSPIFEYYHS
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