NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000157

Scaffold Ga0206677_10000157


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000157 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60214
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (11.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F000918Metagenome / Metatranscriptome834Y
F021302Metagenome / Metatranscriptome219Y
F023446Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000015739F000918N/AMYQTNQQAWDEVMRNIKESERRTVICQQMFGQDNLIGLTNEQRDLFWESI
Ga0206677_1000015741F023446N/AMTKNVLFITRLCELMGGDRFFLCDQYCQDDLFEMQDRIAKYIAEQANDGLGLANYMVSQFPSTFQIASTDVE
Ga0206677_1000015742F000352N/AMRNIKLTDGDCTFVHYVLRMYANQTDNLDQDDKEEIYEVANKFK
Ga0206677_1000015760F021302N/AMRTLIRRYKKNRRKAKHVKFLENRIAFLHNEIVSASFKGEFQFNKGITVIYSNVENKAKLLKKYNRRLKILIY
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