NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206677_10000147

Scaffold Ga0206677_10000147


Overview

Basic Information
Taxon OID3300021085 Open in IMG/M
Scaffold IDGa0206677_10000147 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)61285
Total Scaffold Genes85 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (12.94%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018724Metagenome / Metatranscriptome233Y
F046313Metagenome / Metatranscriptome151N
F061766Metagenome / Metatranscriptome131Y
F067632Metagenome / Metatranscriptome125Y
F075871Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0206677_1000014720F061766N/AMAKIDLDGDGKADVSISIPQIITIAAMFASIVGSYYTLNARVEAVEVQAKKLKENEQKYTWPSQRKTEEEVKTLEAEMRAFMKDIEYLRRDIDRKKSK
Ga0206677_1000014750F067632N/AMNTQLQNYLDLQNKIARIEKLTNASWDTKYMLEKFVPTVWNDGFDVQDIIDYITVKLHEVITKLENEKQIETTNTK
Ga0206677_1000014754F075871N/AMNKLVQQIADECIDIIDEQIDNTIHWELDVNDLEGDDLSKLELKIKQQILFTLIKKVTK
Ga0206677_1000014758F046313AGGMKTKDKLYDLRQAIDDLVAIGPDYAHFMNAQIAHKNLKKIKKLLEYVG
Ga0206677_1000014760F018724N/AMLQQLHEIHGKLDMLQDLKIQGLGLSLDQQQQLLIIHQQLLDQKFQLERQIKKEYIL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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