NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194055_10004164

Scaffold Ga0194055_10004164


Overview

Basic Information
Taxon OID3300021079 Open in IMG/M
Scaffold IDGa0194055_10004164 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L442-9m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10925
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.775Long. (o)-93.818Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002227Metagenome580Y
F003748Metagenome / Metatranscriptome470Y

Sequences

Protein IDFamilyRBSSequence
Ga0194055_1000416414F002227N/AMKLTIQSTHNAQTIVDLFNAIITGNEAGGATPLSIYDEDKHICSLVGKSGEQILELIIEREVGDKLCAVAIEEVHSPESVQERPEVN
Ga0194055_100041649F003748N/AMFKVNRQDGAAQFINTEGDFVVTVSKVEEALDNKGREVCKVTFKTDDGSSTSDRFINQENTWFRVNQLVAATNHNVPDGTEVDFLGKKGSFGEFIKAMVGAKLIIVARFEEYVDQAGEKKKIIRVKNMKAVAPVAAEDNLPY
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