NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214219_1048073

Scaffold Ga0214219_1048073


Overview

Basic Information
Taxon OID3300020735 Open in IMG/M
Scaffold IDGa0214219_1048073 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)621
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036080Metagenome / Metatranscriptome170Y
F051683Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0214219_10480731F051683N/ATRDNLAQSYVSVSSMMKSGKSWHEDDVASWKELLPALKKVGSWYSIDFDADIKKARKKK
Ga0214219_10480732F036080AGGAMNSKVDLESAIMLAWQTSEDLDLLFKHYGDHPVPMSEDDVLNALLGIKTLHDMRCESLMDTYCRKMELNQYCTDPEKIAARDKMFEIIEKKGKKK

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