NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214172_1007396

Scaffold Ga0214172_1007396


Overview

Basic Information
Taxon OID3300020733 Open in IMG/M
Scaffold IDGa0214172_1007396 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2286
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009462Metagenome / Metatranscriptome317Y
F026556Metagenome / Metatranscriptome197Y
F043403Metagenome / Metatranscriptome156Y
F063276Metagenome129Y
F070810Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0214172_10073962F063276AGGAMSDSSFRQNLDFFMVMLLGLAGLVFAIYWNYTHPHLVVKYDCSIAEISPDYPVQVKEGCRKLRARNN
Ga0214172_10073963F070810AGGMETSNKVYEVRIPWENQKEYWWNELCADIVEVFGLPGGRYTSHPYSDYMLFYFKSKKDFHLCQILVSDKI
Ga0214172_10073965F026556GGAGGMTSAIIKLMFGIALILIALIFGPIVGIWSLNTLFPTLAIPYTWQTWLAFNCLFGGSIATRLKK
Ga0214172_10073967F009462N/AMLWENTEHLKQLKEMKMELHESVRDTYTETVIKEHEGFRLVLKKHEVLNPKGLFSVDMEQQSLKDGVVQDTAVYNFFMTRDEMATLASALTA
Ga0214172_10073968F043403N/AGTNTTWTTGTSVANPYDAVMKINQTSPPTIEVKGNMVINGRDLEERLETIEKVLNIPERDVILERKHPKLKELYDAYINALGKYRTFEAIKGDENGTT
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