NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214172_1000124

Scaffold Ga0214172_1000124


Overview

Basic Information
Taxon OID3300020733 Open in IMG/M
Scaffold IDGa0214172_1000124 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)42032
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (84.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F037028Metagenome168Y
F053744Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0214172_10001243F021233GAGGMPEPELEPTHDHRFNKLHEFAIRAFRWEGKPEEQNMLESIEELVEGFLKDYIHPAEVIIARFNSDSSLQGAEADRLFLNLQSAIVSIEEEVTRRYLRAQYSYYMLDDKYWEAYRKPAKGTVNDLEARARTETREERYFYFVQYAAWRIINDKVQSLKATQRHIQNQIYRRG
Ga0214172_100012431F037028GAGGMEEKTFSGTPANYDDDDYDSFIEYTPVESKQELINEINLETASPRELLIYFAERYKQIHGFEHVVDWVKEIAIFKSFIERYNKDAGPMVALLFDKHKGKINDMVMTPTAFSKGSKWIQDTLYIELQQNKIKEESKTSSEGLMNTDEFIKRFAI
Ga0214172_100012435F053744N/AMAAWVPFKDDDQRFTVAMAAAFFDLNPSAFRKKEKFLYDKKGEKIEIGRNGTHRSYSLNDILRIAHALRRADKMTDRQLKLIVLRVDAFKEPVKKHRKKFRKGIKRDD
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