NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214170_1000625

Scaffold Ga0214170_1000625


Overview

Basic Information
Taxon OID3300020731 Open in IMG/M
Scaffold IDGa0214170_1000625 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)11576
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (78.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F054520Metagenome139N
F069612Metagenome123N
F074308Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0214170_100062514F054520AGGGGGMLEKTIIAATGLGYLMVGVLQLRKGSIPNAMIWLGYSFAQVGLWMALK
Ga0214170_100062519F007166GGAMDELYQVMTEMEQRLELALDNMEYGTELSQDDVDVIRAACGKPNNKRNNLLQSVFEDFGKVFGGQNAPV
Ga0214170_100062523F069612AGGAMTCQVCKFFVFNQNDMMGACKLNPIVVNKLPQDWCGQEMPTEYEAVVVPAHQAEVLPDTAPIVEVVYDINTDEVKPKRGRRKNVNSDL
Ga0214170_10006257F074308AGGAMGKMDSSKGIPLSTGDKLPKGADASDTSGERKVKLVGGVGMGKMDAMGSRPLSHAGNFEGKLGELNDGNMGERECYSHKRVGHDQDDM
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