NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214178_1024921

Scaffold Ga0214178_1024921


Overview

Basic Information
Taxon OID3300020718 Open in IMG/M
Scaffold IDGa0214178_1024921 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)776
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059665Metagenome / Metatranscriptome133N
F075668Metagenome / Metatranscriptome118N
F104447Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214178_10249211F104447N/ATIHQLRLKNEFCDIINSIAVKKDFDSNARQYVRIHEILKEVKTINPDWRLTACAKYSWK
Ga0214178_10249212F075668N/AMSNKYSVNDVRCLVMYALNKVDTQKDFCENFRVFSGLYVAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSRSNKSCRKINRLNQFYE
Ga0214178_10249213F059665N/AMSEEKENSKPRFSVRNRTRPNRGRWSDNDLLLFVQSLLNSVNTEENFQVNLNVMEELFEAIKDFRERRPNWYFILEKIPASSREDIGND
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