NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214198_1020528

Scaffold Ga0214198_1020528


Overview

Basic Information
Taxon OID3300020710 Open in IMG/M
Scaffold IDGa0214198_1020528 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)824
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046749Metagenome150N
F090956Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0214198_10205283F090956AGGAMNEFNLGPIISTAIAIAGMLFALVMGYLMGYNDAKDGR
Ga0214198_10205284F046749AGGAMKDPNQHFYNQMEMHVRDSNRTLRRLRRPPLPQINAWDVTMSDEMLYQQVYADEVPCVEILMPKDRLETIINYIKYAESEIEKHTTDRQLMARYEQDRVVRLNNPAVEKAYQHYCTLLELCRT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.