NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214198_1001805

Scaffold Ga0214198_1001805


Overview

Basic Information
Taxon OID3300020710 Open in IMG/M
Scaffold IDGa0214198_1001805 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3455
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016143Metagenome249Y
F016248Metagenome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0214198_10018056F016248GGAGGMEKKELSGLARQLLQTSGAQTFFTQTEFDDALALAQAEIMHVAVETTRRAILIEREECAKLADECVDIEKLGEAIRNRIPSQRQ
Ga0214198_10018058F016143AGGAGMDKDYIYTPAGTDIAIRWKAMGWIPPSEQPEYQQKWKFYQELPMRKLDDNAKKEYEAVMRKAKVARIK

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