| Basic Information | |
|---|---|
| Taxon OID | 3300020710 Open in IMG/M |
| Scaffold ID | Ga0214198_1000149 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18510 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (77.78%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000447 | Metagenome / Metatranscriptome | 1128 | Y |
| F000684 | Metagenome / Metatranscriptome | 938 | Y |
| F019324 | Metagenome / Metatranscriptome | 230 | Y |
| F045504 | Metagenome | 152 | Y |
| F095359 | Metagenome / Metatranscriptome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214198_100014918 | F019324 | AGGAG | MLGYEVYDQEEMVTAVQSALTTVSPDDDPWLYNNLQMTISFLQGLWAEGYFD |
| Ga0214198_100014935 | F095359 | GAGG | MEIIIGGLGQTISAYCPVCSEKMSHWCNATLGKGSTIWYDWKCKDCQLSLKSDKNGNAKLLKEVANV |
| Ga0214198_100014940 | F000684 | N/A | MTLHGYTYQIGDLFTTSKTGVTGRINGFSPISNKVTRVGLTLANGSKRFAMVKTSK |
| Ga0214198_100014943 | F000447 | GGAG | MGYIEIFRINEDGAGWVDLSALTSHELFELEIGLFEEGAL |
| Ga0214198_100014950 | F045504 | GGA | MNKLSDLCHNIYYVLNEQRDLYHIYTEQLDFFIPSSGLNHLKYGLEAHYTQTEYLLDCSDEELKELGKIRPKRSSIEEVEYQLQRKSFTGEIIKANQLISRLPVFSQSRNRNGKQNIADKRWKNAIKDENPKVLRLLEWFEEEESFIRTKFSNVAWTRGTFAISPCHIYPAGKDRGEDSWTPDKILRDISLVNKCFDKISSSDLQGKHATNAEEAQIAIDYLDQFEWDTLSISRQALYVLLFRRIVQNFYDEYKITDVDLDI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |