NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214190_1004415

Scaffold Ga0214190_1004415


Overview

Basic Information
Taxon OID3300020695 Open in IMG/M
Scaffold IDGa0214190_1004415 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1935
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013610Metagenome / Metatranscriptome269N
F025270Metagenome / Metatranscriptome202N
F083683Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0214190_10044151F083683N/AKELKSLDPEYPVTDIVQASELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDYIYRYHICRCLRCKSEGFLCTQHVLDSSNEISSPQSDTSEEGKPFPALNSKR
Ga0214190_10044152F013610N/AMETSTNTDNPEKKQKIEKQKKLVADLFSTLNLVFTQTKLGIEKSDLLLRAIHQFKTDILEIDPHWKLISWPHITIGRIFCSIDAIVTEDKWDCETNKFLFNEIKDAMMKLRRFNNYWQLTEEDAITYTGQVSAGDKTRGYRDTLEELERLIIEV
Ga0214190_10044153F025270N/AMNQETLENGNTLRSLRVRQATKASKYKLKRQWQKIAAEALARLNDVKTNEINTSEHNIAVFNEIFIKIQELRRLDPEREINQYALAQAVITKYNCSLCLPTDDSDYEYEPVNS
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