NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214190_1000075

Scaffold Ga0214190_1000075


Overview

Basic Information
Taxon OID3300020695 Open in IMG/M
Scaffold IDGa0214190_1000075 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 15JUL2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)33525
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (18.18%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022249Metagenome / Metatranscriptome215Y
F050334Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0214190_100007519F050334N/AVNEFLAIMGIGTVVAIWVVANLPKSRGYRRDTVSFEQKPLQTPAWRKDISEVYSTDGFDYLRKLERHQDDPHHWPCPFPPPESHTPKFD
Ga0214190_100007521F022249N/AMLKRNGEDCEHPVPNYPGLLTASEFKAYNVAVPLVAVEVRLFNERATTLSEIEKQSAGTAEQVTSQMARDLPSLTVKGKPESEWKIRHVLIKSARSEMLLCSRDHEGEQQFGVVEKIDPKSPFARVHGDTDLQMTGNNAFVLLQNYVESERSVLQLFRKDIEATVEEKLSEKFPSQNHSRVVRAISARCETQAPVESEKENPAKSVKIRM
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