NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214224_1008997

Scaffold Ga0214224_1008997


Overview

Basic Information
Taxon OID3300020692 Open in IMG/M
Scaffold IDGa0214224_1008997 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 10SEP2007 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)907
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011134Metagenome / Metatranscriptome294N
F073465Metagenome / Metatranscriptome120N
F089846Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0214224_10089971F073465N/AMSNWRYRWRRPRPRYRPAPPAPRIEAVPIRSIEALLMAVIQAMNAIPPSDDFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRFIPHQVDDQGFSEPEND
Ga0214224_10089972F089846N/AMDSNQNIFRNINKAIRAITPGVYNDAQVENLMKIYDVIVAEKEANPSWQLPSPETRKRKKPKLK
Ga0214224_10089973F011134N/AVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRTEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK
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