NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214210_1001777

Scaffold Ga0214210_1001777


Overview

Basic Information
Taxon OID3300020689 Open in IMG/M
Scaffold IDGa0214210_1001777 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3141
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016494Metagenome / Metatranscriptome246N
F027744Metagenome / Metatranscriptome193N
F028416Metagenome / Metatranscriptome191N
F031075Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0214210_10017772F027744N/AMNSIVRESKNNFYEPDISNTGQRVNPELPLTIAERDAVARGVVRFNNQRQYRKRRLDNLLEALDTRHGTVYDPGNVEILIEVFNTVGLIKCAFPDKSIKWELPKHRPLPLAESLEVENALIKSALEKKFFQRVNCEKEKELYFNSLKL
Ga0214210_10017773F028416N/ALRKKGDSMNEQPINGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC
Ga0214210_10017776F031075N/AMSQEKSTSVSEIVNRKENPEDCGHEVNACTCPPDKEYEKYTKIRALTHLIGMINFMPPFDGPISYGPLERIWNFKKQIRGIDPNWILADEITLLEHQVLNQIDVIDINVPWNSARNKLRYIDLHQTVTKLRTIHPNWQMYLEDSKNHHFCKCYSCSEIKRKYQEELDATSSEELSSEEENGK
Ga0214210_10017777F016494N/AMSQKDNSGEEITVDGSTELGQLVKSILHTVDELFPPKPEFSFEDMMVQFYTLKNKIKKIDSNWKFENTDISYMFEILKLLDAINIEEIPDLQQNAKVCQRLLHRVRIMRQVNPLWSLDVEGIVKFLYPTLNTQPN
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