| Basic Information | |
|---|---|
| Taxon OID | 3300020688 Open in IMG/M |
| Scaffold ID | Ga0214239_100068 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 30650 |
| Total Scaffold Genes | 47 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (70.21%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001201 | Metagenome / Metatranscriptome | 749 | Y |
| F008619 | Metagenome | 330 | Y |
| F074309 | Metagenome | 119 | N |
| F079411 | Metagenome | 115 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214239_10006824 | F001201 | N/A | MYKEGRQIVTDIAKEVDGVVKDVKTVQKKAKGLLGFLSAVFGKKEEEQPQVAQPAKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNGLKNYKKEQEELALHATNEEGNEIAIKLVIADLQMEKLNSELSNYMVYHVPSELKDLYSRVNEQIGHIANVQALARREELLAKRKAQWQRNQKADLIKNRMVVSAITVLMILWMWGMILSLTHQL |
| Ga0214239_10006832 | F074309 | GGA | MTVFNKNSLTQVSGFDNPILSGELVWEQKAFWNLFMTNDAGVLPLTGATIDAQIIRRVLTNVIDTRNGLTFTIGDYTPTPTPITLTVTNINYTGGSFTLVIDDSAWGLMATDPGLDIADPNGIGYSGRIKISFPANGSTPAEDIIVFLFFIVRSDGIVVE |
| Ga0214239_10006837 | F008619 | AGGAG | MAGFQNIVEIQQKMNVNNRRTVGQQVSRSGQITVAQYLTTVPWVFTITPHNFLYYPQVRDVIQAIDNLDRQLPDYITFQSNDLKWFTAMRGTATVASLSGTPTPNSQTINITSNGTLLAGDFISINGYVYKVTADSAGSVININRPLIGSPTSTAPVLLGNNCSFYVLAEQLPTYTLNPMTNGAWVEWSGPFVFREYITG |
| Ga0214239_1000687 | F079411 | GGA | MAYVMSGMMPMVNLKNKLVSLQLKNHFALDDLRMGKATKNDIDTLISAFNITEALAKQKIGDEYQQEIKAAQDALYECAKRGVEMNYRFIVKGPELKAINFVMQLHDEQLKAATVKDIEVATNYVNQCLTQKRARPILSK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |