| Basic Information | |
|---|---|
| Taxon OID | 3300020686 Open in IMG/M |
| Scaffold ID | Ga0214194_104276 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1374 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001629 | Metagenome | 660 | Y |
| F044911 | Metagenome | 153 | Y |
| F091106 | Metagenome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214194_1042763 | F044911 | AGGAG | MTPAELLHKDAAKYATNRKLAYIGLMNKKEVDHMTEDALNGIWLAHYEGYREGYWVATCDVKFSTDPAKLKEKNT |
| Ga0214194_1042764 | F091106 | AGGAG | MNKRLTPTTQLRWVDKKYYYYDSYDSQNQTIAVLEQWHQNEVLTESHGWQPVEGGGWREIRKEKSE |
| Ga0214194_1042766 | F001629 | AGTAGG | MYLNQGMLAEGLVGELLDLVHKYDETLYMATVIGCLELVKQQLINDSLEDEDD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |