NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214194_101368

Scaffold Ga0214194_101368


Overview

Basic Information
Taxon OID3300020686 Open in IMG/M
Scaffold IDGa0214194_101368 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2788
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016925Metagenome / Metatranscriptome243N
F023279Metagenome / Metatranscriptome210N
F035195Metagenome / Metatranscriptome172N
F039492Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0214194_1013681F039492N/AMKLRERDLSGKVCARQNEKSKRENIVSLLKNKNIKKVTVKKVTEKYTLDEQLPEAKLELGHKTNAIRMLSDLDAPLYMHILTLELCKMTQLIRSQVKEQDKESIAHKAYHIIKEIKKKRPKWIFHQNPRAEYNFEKKSLTDGQVYDRELLKIKDCRNTCGIVNKVNVKRSFSQNKHVFEELKQMQSMGQEKTPRWVFAYKIPSLPIIKDINFNFK
Ga0214194_1013682F016925N/AMKKGEGKAMPTQHIVATNGIIRPVGPTDLRDLMGIPRIPVARTIQPEIVIDLEKLEEIDISKTSGIKRELLMIARNRAIRQLQKNIDNLVNGDQTQSELQKFRKIQDTLKRVKAIDPSWKIKLNF
Ga0214194_1013684F035195N/AMEDRTLKTEAEVIELVQSSLNNVETEKSFEDNYEVMLKLFCAIKRLKSIRPKGTFRAVGVSFKQVSTPKK
Ga0214194_1013685F023279N/AMTTEKMADSSKENTEAIVDTIKSELAIGFKNCIDKIDTEKKVVDRYNWEIYVKINKILHNSRRLDPQWTIEGDIGNSWSLNSILERDFKSKILNIDLSEIDSIDLEGYEELHQSLKDLRTSNPGWSTNKTRRSSPILLTPTQIGLQEENTS
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