NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214194_100117

Scaffold Ga0214194_100117


Overview

Basic Information
Taxon OID3300020686 Open in IMG/M
Scaffold IDGa0214194_100117 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)17095
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027373Metagenome194N
F062385Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0214194_10011716F062385AGGAMGYPKMEKLPMVAKSSDRTGEKKVSVPKEDKERFVPGASGEKIPKGALSSDTSGERKRPIEGGVGMGKMDGIGERDGSHMGHHDGRLGEMKGHMGEKNVYEHKRVPHVQDTM
Ga0214194_10011718F027373GGAMTNTETKITFYKPPEPVGYWCLYGGSPTTTFAMYQKPTDEQIKNTTELLGWIWKDAK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.