NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214256_100977

Scaffold Ga0214256_100977


Overview

Basic Information
Taxon OID3300020685 Open in IMG/M
Scaffold IDGa0214256_100977 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3699
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005200Metagenome408Y
F017776Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0214256_1009774F005200N/AMDPITVFAACKAAHAGIRECIDLYQDFKKDGKDVGDIVNDIGKNLGAFFTHQESLKEAEKEEKLKPIDKKTSINEEAMNRIMRQEQIQRMETELREMIIYQVGMPGLWSKFVDMREVVRKEREKIEREQKKPLRWLHLKEGSSSTNGKSGQHYALAF
Ga0214256_1009777F017776GGAMEKVTLSTPLVNNIMAYLGTRPFQEVFQLIDAVQKEAQDQTPAAPVEQ

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