NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214256_100051

Scaffold Ga0214256_100051


Overview

Basic Information
Taxon OID3300020685 Open in IMG/M
Scaffold IDGa0214256_100051 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 11AUG2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)21204
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (67.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004517Metagenome / Metatranscriptome434Y
F007848Metagenome343Y
F022156Metagenome / Metatranscriptome215Y
F040482Metagenome / Metatranscriptome161N
F053781Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0214256_10005112F022156GAGMGDLDKEIVKEAIKEWLNERVTQFGWFSLKTIGYALVAILGYLWLITHGFEPPK
Ga0214256_10005123F007848GGAMKDFLGSCLLGTLLGAMVGYGVPAKAQTYQVNNGGTVQIQGNTAQFVNSMGVTTQTATIYPNQVIIQTPNGVTTSVIGTTLYTVPPSPPTPMTVRVLQ
Ga0214256_10005130F040482N/AMTWNLRLVNMSNPYEDYFEIREVYYDTMGKPIGHSNASIGGEDRLEVDRYIELAKLALDKPILKFADNEDTSKDIE
Ga0214256_10005134F053781GGAMTLKVTEEFLILKLLCKMYDEALKNANATQMLEISVDIAKSSEKLEQLTVDYINGH
Ga0214256_10005141F004517N/AMKPMDHKYKKENALLRNHKETTLEKNQADRIARRKLIANKLKDLDKEVK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.