| Basic Information | |
|---|---|
| Taxon OID | 3300020679 Open in IMG/M |
| Scaffold ID | Ga0214232_100037 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 hypolimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44872 |
| Total Scaffold Genes | 71 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 57 (80.28%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F021463 | Metagenome | 218 | Y |
| F040982 | Metagenome / Metatranscriptome | 160 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214232_10003722 | F021463 | AGG | MSDIENRVVKLEVISENHAEDIKELRETSADLKTTLHAIEKNLNQIKYVAIGALAIIAAQTVGLDKAIKILLGGF |
| Ga0214232_10003744 | F040982 | AGGA | MTRRKKRDLKSEGKWWSDSQKLEAATTFLAIGNGAQTAAALEIPLATFNRWRYTEWFKKMVDDLKAEDNLKLNARLNKIVSRALDVTEDRLEKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIETKPQQEQIEKTVDARLAALAEQFKTFAKPKEKDITPKPLVIENEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |